Univ. of South Florida, Fl, USA DNA based Computer 7 June 10-13, 2001 Univ. of South Florida, Fl, USA 참가자 : 장병탁, 신수용, 이인희, 이지연

(C) 2001, SNU Biointelligence Lab, http://bi.snu.ac.kr/ Tutorial (June 10) Erik Winfree, Introduction to Computation Turing machine 등 기본적인 이야기 Junghuei Chen, Molecular Biology for DNA Computation 역시나 기초적인 생물학 지식들 Anne Condon, Design of DNA strands for DNA Based Computation Sequence design의 기준과 몇가지 시뮬레이터들을 소개 Ned Seeman, It Began with Watson and Crick, but it Sure Didn't End There: Nonstandard Backbones and Base Pairing 전문적인 이야기들. (base stacking, none WC complement) (C) 2001, SNU Biointelligence Lab, http://bi.snu.ac.kr/

(C) 2001, SNU Biointelligence Lab, http://bi.snu.ac.kr/ Monday Session Nicholas Cozzarelli PLENARY LECTURE: "Topological Considerations In The Replication Of DNA." DNA 복제시 필요한 여러가지 이야기들 (어려움) Session I - Experimental Systems I Friederich C. Simmel & Bernard Yurke - Operation of a purified DNA nanoactuator 2bit molecular machine Thomas Hinze, Uwe Hatnik & Monika Sturm - An Object Oriented Simulation of Real Occurring Molecular Biological Processes for DNA Computing and its Experimental Verification Really good simulator! David H. Wood, Hong Bi, Steven O. Kimbrough, Dongjun Wu & Junghuei Chen - DNA Starts to Learn Poker 역시나.. (C) 2001, SNU Biointelligence Lab, http://bi.snu.ac.kr/

(C) 2001, SNU Biointelligence Lab, http://bi.snu.ac.kr/ Monday Session Session II - New Theoretical Systems Hiroki Uejima, Masami Hagiya & Satoshi Kobayashi - Horn Clause Computation by Self Assembly of DNA molecules 인희가 생각했던 것과 100%동일한 방법으로 Horn Clause를 해결 Session III - Simulations and Proposals Max Garzon & Chris Oehmen - Biomolecular Computation in Virtual Test Tubes Using cluster machines (C) 2001, SNU Biointelligence Lab, http://bi.snu.ac.kr/

(C) 2001, SNU Biointelligence Lab, http://bi.snu.ac.kr/ Tuesday Session Richard Lipton, PLENARY LECTURE : “DNA Computing: Does it Compute?” Sunrise or sunset? No killer app. Not practical yet. Session IV - Computation Theory H-systems.. John SantaLucia, PLENARY LECTURE: “DNA hybridization is NOT digital” Really helpful talk! (C) 2001, SNU Biointelligence Lab, http://bi.snu.ac.kr/

(C) 2001, SNU Biointelligence Lab, http://bi.snu.ac.kr/ Tuesday Session Session V - Microreactors in Experiments Danny van Noort, Frank-Ulrich Gast & John S.McCaskill - DNA Computing in Microreactors Lap chip 조금 복잡한 듯이 보임. Session VI - Graphs and Algorithms (C) 2001, SNU Biointelligence Lab, http://bi.snu.ac.kr/

(C) 2001, SNU Biointelligence Lab, http://bi.snu.ac.kr/ Wednesday Session Ronald Breaker, PLENARY LECTURE: "Nucleic Acids as Catalysts and as Molecular Switches“ Complicated Session VII - Methods to Facilitate Novel Experimental Systems Udo Feldkamp, Sam Saghafi & Hilmar Rauhe - DNASequenceGenerator - A Program for the construction of DNA sequences 작년이랑 변화없음 M. Sakthi Balan, Kamala Krithivasan & Y. Sivasubramanyam - Peptide Computing: Universality and Complexity Peptide computing… (C) 2001, SNU Biointelligence Lab, http://bi.snu.ac.kr/

(C) 2001, SNU Biointelligence Lab, http://bi.snu.ac.kr/ Wednesday Session Session VIII - Experimental Systems II James C Mitchell & Bernard Yurke - DNA Scissors Nobuo Matsuura, Masahito Yamamoto, Toshikazu Shiba, Yumi Kawazoe & Azuma Ohuchi - Solutions of Shortest Path Problems by Concentration Control TSP해결 노력. 그러나 불충분. (C) 2001, SNU Biointelligence Lab, http://bi.snu.ac.kr/

(C) 2001, SNU Biointelligence Lab, http://bi.snu.ac.kr/ Wednesday Session John H. Reif, Thomas H. LaBean, Michael Pirrung, Vipul S. Rana, Bo Guo, Carl Kingsford & Gene S. Wickham - Experimental Construction of Very Large Scale DNA Databases with Associative Search Capability 대용량 DB 건설 project Adam J. Ruben, Stephen J. Freeland, and Laura F. Landweber - Punch: An Evolutionary Algorithm for Optimizing Bit Set Selection 좋은 대학이라고 좋은 논문만 나오는 건 아니다. (C) 2001, SNU Biointelligence Lab, http://bi.snu.ac.kr/

(C) 2001, SNU Biointelligence Lab, http://bi.snu.ac.kr/ Posters John Rose가 쓴 thermodynamics를 이용한 DNAC 분석 (PRL 심사중) 일본에서 만든 Simulator 자랑스럽게 25(?) variable까지 할 수 있다는 SAT 해결법 기타.. (C) 2001, SNU Biointelligence Lab, http://bi.snu.ac.kr/

(C) 2001, SNU Biointelligence Lab, http://bi.snu.ac.kr/ Sightseeing 비행기 일정상, 관광은 별로 못 했음. Tampa의 downtown은 정말 썰렁. 그러나 해변은 정말 멋있었음. 쿠바의 해변보다도 훨씬 인상적. (C) 2001, SNU Biointelligence Lab, http://bi.snu.ac.kr/